Agenda
ICBO 2017 main conference will take place across three days, from 13/09/17 - 15/09/17. The important dates are listed below:
Sep 13, 2017: ICBO workshops and tutorials
Sep 14-15, 2017: ICBO main conference
Program PDF 482Kb
Final workshop and conference schedule can be found here!
Accepted papers
Paper Session A
1. Scrutinising the axiomatic basis of SNOMED CT: How confused is it by the ambiguities of the natural language “terms”
- Jean Marie Rodrigues, Stefan Schulz and Alan Rector
2. Supporting Ontology-Based Standardization of Biomedical Metadata in the CEDAR Workbench.
- Marcos Martínez-Romero, Martin J. O’Connor, Michael Dorf, Jennifer Vendetti, Debra Willrett, Attila L. Egyedi, John Graybeal, and Mark A. Musen
3. Efficient construction of a new ontology for life sciences by subclassifying related terms in the Japan Science and Technology Agency thesaurus
- Tatsuya Kushida, Kouji Kozaki, Yuka Tateisi, Katsutaro Watanabe, Takeshi Masuda, Katsuji Matsumura, Takahiro Kawamura and Toshihisa Takagi
Paper Session B
1. A Maturity Model for Biomedical Data Curation
- Mariam Alqasab, Suzanne M. Embury and Sandra Sampaio
2. Integrating an ontology for RDOC with existing biomedical ontologies
- Mark Jensen and Alexander D Diehl
3. BiPOm: Biological interlocked Process Ontology for metabolism. How to infer molecule knowledge from biological process?
- Vincent Henry, Fatiha Sais, Elodie Marchadier, Juliette Dibie, Anne Goelzer and Vincent Fromion
4. Classifying Processes and Basic Formal Ontology
- Mustafa Jarrar and Werner Ceusters
Paper Session C
1. Causation and the River Flow Model of Diseases
- Fumiaki Toyoshima, Riichiro Mizoguchi and Mitsuru Ikeda
2. A model for ontology harmonization: Integrating the Ontology for Biomedical Investigations (OBI) into the Evidence & Conclusion Ontology (ECO)
- Rebecca Tauber and Marcus Chibucos
3. Similarity Metrics for Determining Overlap Among Biological Pathways
- Lucy Lu Wang and John Gennari
Paper Session D
1. Scrutinizing the relationships between SNOMED CT concepts and semantic tags
- Jonathan Bona and Werner Ceusters
2. What is a risk? A formal representation of risk of stroke for people with atrial fibrillation
- Adrien Barton, Ludger Jansen, Arnaud Rosier and Jean-François Ethier
3. Facets, Tiers and Gems: Ontology Patterns for the Hypernormalisation
- Phillip Lord and Robert Stevens
Accepted short papers
Short Paper Session
1. Ontology Development in Patients Information System for Stroke Rehabilitation
- Radhi Rafiee Afandi and Waidah Ismail
2. User and Developer Interaction with Editable and Readable Ontologies
- Aisha Blfgeh and Phillip Lord
3. A Literature Based Approach to Define the Scope of Biomedical Ontologies: A Case Study on a Rehabilitation Therapy Ontology
- Mohammad K. Halawani, Phillip Lord and Rob Forsyth
Accepted posters
Flash Talks
1. OLOBO: A new ontology for linking and integrating open biological and biomedical ontologies
- Edison Ong and Yongqun He
2. Errors and Artefacts in Histopathological Imaging
- Antony Galton, Shereen Fouad, Gabriel Landini and David Randell
3. The Human Behaviour-Change Project: Developing a Behaviour Change Intervention Ontology
- Emma Norris, Ailbhe Finnerty, Marta Marques, Robert West, James Thomas, Pol Mac Aonghusa, Marie Johnston, Michael P. Kelly and Susan Michie
4. Ontology challenges for the stem cell community: towards integrative data mining in the Stemformatics.org stem cell atlas
- Chris Pacheco Rivera, Christine A Wells, Rowland Mosbergen, Othmar Korn and Tyrone Chen
5. Aligning the Human Phenotype and Mammalian Phenotype Ontology using Dead Simple Ontology Design Patterns
- Nicole Vasilevsky, James Balhoff, Chris Mungall, David Osum-Sutherland, Sebastian Köhler, Susan Bello, Cynthia Smith, Peter Robinson and Melissa Haendel
6. OxO – a gravy of ontology mapping extracts
- Simon Jupp, Thomas Liener, Sirarat Sarntivijai, Olga Vrousgou, Tony Burdett and Helen Parkinson
7. FoodOn: A Semantic Ontology Approach for mapping Foodborne Disease Metadata
- Dalia A. Alghamdi, Damion M. Dooley, Gurinder Gosal, Emma J. Griffiths, Fiona S.L. Brinkman and William W.L. Hsiao
8. Extending the Ontology of Physics for Biology with Thermodynamics
- Daniel Cook, John Gennari and Maxwell Neal
9. Toward using ontologies to improve results in searches for mental health information
- Jonathan Bona, John Grohol, Meredith Zozus, Robert Zozus and Mathias Brochhausen
10. Identitas: A Better Way To Be Meaningless
- Nizal Alshammry and Phillip Lord
11. Tawny-SBOL: Using ontologies to design and constrain genetic circuits
- Goksel Misirli and Phillip Lord
12. Late-breaking poster - SciBite: turning text into ontologies
- Jane Lomax, Aurelien Arena, Michael Hughes, Joe Mullan, Anneli Karlsson, Phil Verdemato, Simon White and Lee Harland
Other Posters (not exhaustive)
1. An Overview of a Maturity Model for Biomedical Data Curation
- Mariam Alqasab, Suzanne Embury and Sandra Sampaio
2. Scrutinising the axiomatic basis of SNOMED CT: How confused is it by the ambiguities of the natural language “terms”
- Jean Marie Rodrigues, Stefan Schulz and Alan Rector
3. Ontology Development in Patients Information System for Stroke Rehabilitation
- Radhi Rafiee Afandi and Waidah Ismail
4. Supporting Ontology-Based Standardization of Biomedical Metadata in the CEDAR Workbench.
- Marcos Martínez-Romero, Martin J. O’Connor, Michael Dorf, Jennifer Vendetti, Debra Willrett, Attila L. Egyedi, John Graybeal, and Mark A. Musen
5. Efficient construction of a new ontology for life sciences by subclassifying related terms in the Japan Science and Technology Agency thesaurus
- Tatsuya Kushida, Kouji Kozaki, Yuka Tateisi, Katsutaro Watanabe, Takeshi Masuda, Katsuji Matsumura, Takahiro Kawamura and Toshihisa Takagi
